Nextflow workflow report

[kickass_wright]

Workflow execution completed successfully!
Run times
21-Dec-2020 17:00:18 - 22-Dec-2020 08:56:08 (duration: 15h 55m 50s)
  5974 succeeded  
  0 cached  
  0 ignored  
  1 failed  
Nextflow command
nextflow run /home/rpetit/miniconda3/envs/bactopia//share/bactopia-1.5.x/main.nf -w /home/rpetit/projects/nthi/studies/2020-comparative-genomics-nthi/analysis/bactopia/work/bactopia --fastqs ../atl-fastqs.txt --datasets ../datasets/ --species 'Haemophilus influenzae' --genome_size median --cpus 4 -profile slurm
CPU-Hours
699.2 (0% failed)
Launch directory
/home/rpetit/projects/nthi/studies/2020-comparative-genomics-nthi/analysis/bactopia
Work directory
/home/rpetit/projects/nthi/studies/2020-comparative-genomics-nthi/analysis/bactopia/work/bactopia
Project directory
/home/rpetit/miniconda3/envs/bactopia/share/bactopia-1.5.x
Script name
main.nf
Script ID
403ec4cd2e9dd479726fe46943409b75
Workflow session
11e0dd67-38a5-43f6-9471-dc966f5831dd
Workflow profile
slurm
Nextflow version
version 20.10.0, build 5430 (01-11-2020 15:14 UTC)

Resource Usage

These plots give an overview of the distribution of resource usage for each process.

CPU

Memory

Job Duration

I/O

Tasks

This table shows information about each task in the workflow. Use the search box on the right to filter rows for specific values. Clicking headers will sort the table by that value and scrolling side to side will reveal more columns.

(tasks table omitted because the dataset is too big)